"File containing subset of probe names associated with selected array design from which to choose random pairs") Option probenames = OptionBuilder.hasArg().withArgName( "File containing subset of probe names") withDescription( "Print out randomly chosen probe pairs in a separate output file").create( "print") Option print = OptionBuilder.hasArg().withArgName( "Output file for random links") Option noZeroGo = OptionBuilder.withDescription( "Exclude genes with no GO terms").create( "noZeroGo") withDescription( "Write output to this file").create( 'o') Option outFileOption = OptionBuilder.hasArg().isRequired().withArgName( "outFile") "Number of runs for random gene pair selection from array design (starting from 1 default = 1)") Option numberOfRandomRunsOption = OptionBuilder.hasArg().withArgName( "Number of Random Runs") withDescription( "Short Name of Platform").create( "array") Option arrayDesignOption = OptionBuilder.hasArg().isRequired().withArgName( "Array Design") withDescription( "Column index with gene2 (starting from 0 default=1)").create( "g2col") Option secondGeneOption = OptionBuilder.hasArg().withArgName( "colindex") withDescription( "Column index with gene1 (starting from 0 default=0)").create( "g1col") Option firstGeneOption = OptionBuilder.hasArg().withArgName( "colindex") withDescription( "human, rat, mouse").isRequired().create( 't') Option taxonOption = OptionBuilder.hasArg().withArgName( "Choice of taxon") withDescription( "dataType").isRequired().create( 'd') withArgName( "Choice of generating random gene pairs OR Input data file") Option dataOption = OptionBuilder.hasArg() withDescription( "weight").withLongOpt( "weight").create( 'w')
Option weightedOption = OptionBuilder.hasArg().withArgName( "Choice of using weighted matrix") withDescription( "MAX").withLongOpt( "max").create( 'x') c o m * / Option maxOption = OptionBuilder.hasArg().withArgName( "Choice of using MAX calculation") withDescription( "resnik, lin, jiang, percent, cosine, kappa default = simple")ĪddOption(goMetricOption) / * f r o m w w w. Option goMetricOption = OptionBuilder.hasArg().withArgName( "Choice of GO Metric") Usageįrom source file: SuppressWarnings( "static-access") Source Link DocumentThe next Option created will require an argument value. Prototype public static OptionBuilder hasArg() Ste #327 Glen Cove, NY 11542 83 Description: DermSource negotiates on behalf of the independent pharmacy for competitive prices, availability of highly sought-after dermatology products, and the guarantee of a fair deal.IntroductionIn this page you can find the example usage for OptionBuilder hasArg. To learn more about CPESN networks, please visit Bahrum Siddiqui 50 Glen St.
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